Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs9284239 chr13:108892421 C/G 3.52E-7 368 20.9 17.33 5.38 KM Plot
LIHC rs9343319 chr6:76415673 G/A 5.55E-5 361 20.6 18.87 12.15 KM Plot
LIHC rs9403422 chr6:143243156 A/G 3.47E-5 368 3.37 18.48 20.03 KM Plot
LIHC rs9403423 chr6:143243355 T/C 4.38E-5 366 20.03 19.13 3.37 KM Plot
LIHC rs9587535 chr13:108882748 A/G 7.5E-7 364 20.95 17.63 6.8 KM Plot
LIHC rs9587536 chr13:108895741 A/G 5.7E-5 363 20.7 17.63 6.8 KM Plot
LIHC rs9587538 chr13:108905475 T/C 4.83E-5 361 20.7 17.63 6.8 KM Plot
LIHC rs9678735 chr2:37059868 T/A 1.5E-5 360 20.45 12.17 8.73 KM Plot
LIHC rs9789806 chr20:36994914 A/G 1.55E-15 364 20.03 18.77 0.53 KM Plot
LIHC rs9829468 chr3:195641417 T/A 4.89E-5 363 19.57 22.37 3.07 KM Plot
LIHC rs9926795 chr16:81346417 A/G 6.09E-8 368 19.83 18.47 1.2 KM Plot
LUAD rs10166655 chr2:218017603 G/A 3.8E-8 499 21.9 20.72 8.8 KM Plot
LUAD rs10166826 chr2:218017792 C/T 3.57E-8 505 21.93 20.72 8.8 KM Plot
LUAD rs10431142 chr11:62598144 G/T 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs10431143 chr11:62598229 C/G 2.27E-5 505 21.93 21.73 7.7 KM Plot